SubtiBank SubtiBank
yjdF [2017-12-11 08:59:35]
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yjdF [2017-12-11 08:59:35]

unknown
locus
BSU12030
pI
10.56
mw
18.68 kDa
protein length
160 aa Sequence Blast
gene length
480 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 6|Groups of genes] → [category|SW 6.7|Proteins of unknown function]

    • Gene

    Coordinates
    1,275,809 → 1,276,291

    Expression and Regulation

    Operons

    genes
    [gene|575CEC5C5C0458DC86A74F24654AC6990CB1E732|manP]-[gene|E26C70893C5D677C816C814558CC42F90B920087|manA]-[gene|2DB0F763349D34FB1FCBBB4665416E129AD0AE6A|yjdF]
    description
    [Pubmed|20139185]

    sigma factors

  • [protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA]: sigma factor, [Pubmed|20139185], in [regulon|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA regulon]

    • regulatory mechanism

  • [protein|F273002AF97D87BB025B4F014C328C5592EAD621|ManR]: activation, in the presence of mannose and absence of glucose [Pubmed|20139185], in [regulon|F273002AF97D87BB025B4F014C328C5592EAD621|ManR regulon]
  • [regulon|RNA switch|RNA switch]: termination/antitermination, expession may be controlled by a potential [SW|RNA switch] located in the 5' untranslated region of the [gene|575CEC5C5C0458DC86A74F24654AC6990CB1E732|manP]-[gene|E26C70893C5D677C816C814558CC42F90B920087|manA]-[gene|2DB0F763349D34FB1FCBBB4665416E129AD0AE6A|yjdF] mRNA between [gene|E26C70893C5D677C816C814558CC42F90B920087|manA] and [gene|2DB0F763349D34FB1FCBBB4665416E129AD0AE6A|yjdF], in [regulon|RNA switch|RNA switch]

    • regulation

  • induced by mannose ([protein|search|ManR]) [Pubmed|20139185]
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    Biological materials

    Mutant

  • MGNA-A268 (yjdF::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/268 NBRP B. subtilis, Japan]
  • BKE12030 (Δ[gene|2DB0F763349D34FB1FCBBB4665416E129AD0AE6A|yjdF]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE12030 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTCTCAATCATGCATCCG, downstream forward: _UP4_TAATCCAAACAAAAGCAGGC
  • BKK12030 (Δ[gene|2DB0F763349D34FB1FCBBB4665416E129AD0AE6A|yjdF]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK12030 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTCTCAATCATGCATCCG, downstream forward: _UP4_TAATCCAAACAAAAGCAGGC

    • References

  • 20139185,20230605,29223402